PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10839_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family S1Fa-like
Protein Properties Length: 70aa    MW: 7831.61 Da    PI: 11.072
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10839_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA140.43.7e-44270270
         S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                 ++ k+e+kGlnPGlivllv+ggll+ flvgn+ily+yaqknlPPrkkkPvskkk+k+eklkqGv vPGe
  RrC10839_p3  2 KQEKIESKGLNPGLIVLLVIGGLLVAFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKLKQGVRVPGE 70
                 57899***************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046893.8E-39670IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MKQEKIESKG LNPGLIVLLV IGGLLVAFLV GNFILYTYAQ KNLPPRKKKP VSKKKMKKEK  60
LKQGVRVPGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.12e-24DNA-binding protein S1FA1
SwissprotQ423371e-18S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLW9SCA33e-24W9SCA3_9R
STRINGBra034084.1-P6e-22(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769